Giter Site home page Giter Site logo

Comments (4)

davidwedge avatar davidwedge commented on August 29, 2024

Yes, your interpretation is correct. In the subclones.png file, both subclones are shown, with the major subclone (CCF>50%) shown as a thicker line.

from battenberg.

jazberna1 avatar jazberna1 commented on August 29, 2024

Hello Dave,

Thanks so much for clarifying. I have attached the output of my Battenberg run. In the top left plot I see I have two subclones (the two 'X'). Then in the subclones plot I see that for chromosome four both subclones have the same 'major' subclone CN3 and CN1 profile. However in the _subclones.txt I see that the major subclone has a CN2 and CN1 profile. The other subclone has NA as expected since there are no thinlines in the plot. In summary I see that both subclones have the same CN profile but there is a disagreement between the txt and the png files.

Am I doing something wrong with my interpretations?

Thanks so much and apologies for these many likely naive questions.
Jorge

Screenshot 2020-01-31 at 15 16 50

from battenberg.

davidwedge avatar davidwedge commented on August 29, 2024

Yes this is correct. Also, please note that the orange and grey lines show total and minor (not major and minor) copy number, i.e. the orange lines shows nmaj + nmin.

from battenberg.

jazberna1 avatar jazberna1 commented on August 29, 2024

Hello Dave,

Thanks you much ! All clear now
Regards
Jorge

from battenberg.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.