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201511coursera-command-line

practice

2015commandtool

the shell scripts created to process the data in the linux cluster

2015laboratory

R and command line code for the bioinformatic analysis

2015rtools

the repository for little R tools

advance_bioinformatic_gitbook

gitbook for advance bioinfromatic skills

aerial

Aerial Apple TV screen saver for Windows

affyqc_module

Affymetrix microarrays of different technology versions are very often used in transcriptomics analysis. Quality control and normalization approaches do exist, especially as packages in Bioconductor/R. However: -Procedures are often different between teams. -They are not always easy to access as they run through command lines. -It is often not clear what the meaning of the specific settings and results are -They are not always usable for the newer technology types of arrays. To tackle this, we proposed an automated well-documented and user-friendly pipeline for Affymetrix microarray quality control and normalization.

avro-rpc-quickstart

Apache Avro RPC Quick Start. Avro is a subproject of Apache Hadoop.

bioc

bioconductor-coursera

the practice of the coursera class

book-on-bioconductor

The repository for the bookdown project on writing a book about learning bioconductor in chinese

canvas_d0

practice canvas technique #1

clinicaldata2016

code_in_lab

repository for the code used in analysis

cytoscape.js

Graph theory / network library for analysis and visualisation (supports CommonJS/Node.js/Browserify/Webpack, AMD/Require.js, npm, CDNJS, Bower, jspm, Meteor, jQuery, and plain JS/JavaScript)

d3-tag-bundles

Experiment with D3 creating hierarchical text content to display tag bundle structure.

d3cabbage

cabbage project for d3 visualization

datasciencespecialization.github.io

http://DataScienceSpecialization.github.io

go-ipldtool

A fine gadget

googletts

Simple Python script to pass text into the Google Text-to-Speech engine

latex_practice

A repository for the latex example practice

multilayernetwork

create multilayer network viz for biomedical data

openagefriendly

Using R with Taiwan Government Open Data to create a tool for monitor the city's age-friendliness status and easily to interact for the local citizen

paper-on-sysyem-biology-and-bioinformatic

collection of inspiring papers

people-r

a prototype R package to build a data structure center for personal health data

pitranslate

Raspberry Pi Translation Tool

plotly.js

The open source javascript graphing library that powers plotly

programming-resources-on-r

collection of learning material on R

r-beginner

rnaseq_trinity_tuxedo_workshop

materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.