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aracne-ap

Network Reverse Engineering through AP inference of Mutual Information

asneo

attentiondeepmil

Implementation of Attention-based Deep Multiple Instance Learning in PyTorch

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bionic-evals

Evaluation library for BIONIC

canvas

Canvas - Copy number variant (CNV) calling from DNA sequencing data

cfdnapattern

Pattern Recognition for Cell-free DNA

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

cmappy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

cnvkit

Copy number variant detection from targeted DNA sequencing

decombinator

Decombinator version 3, for error-correcting analysis of TCR repertoires

deep-pu-learning

Deep Learning with Positive and Unlabeled samples

deeplearning-biology

A list of deep learning implementations in biology

deepnlp

Deep Learning NLP Pipeline implemented on Tensorflow

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

fold

Deep learning with dynamic computation graphs in TensorFlow

forum

蓝灯(Lantern)官方论坛

geatpy

Evolutionary algorithm toolbox and framework with high-performance for Python

gliph

Grouping of Lymphocyte Interactions by Paratope Hotspots

gseapy

Gene Set Enrichment Analysis in Python

itunes

iTunes: identification of personalized Tumor neoantigens from next-generation sequencing data

jupyter

kidera-atchley

Amino acid properties, kidera factors and atchley factors as text tables and one-liners for R and Python.

machina

Framework for Metastatic And Clonal History INtegrative Analysis

metric-learn

Metric learning algorithms in Python

mhc_experiments

mhcflurry-icml-compbio-2016

Data and analysis notebooks for Predicting Peptide-MHC Binding Affinities With Imputed Training Data