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alphafold2-multiprocessing

Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing

ampal

A simple, intuitive and Pythonic framework for representing biomolecular structure.

aposteriori

DNN based protein design.

balas

Source code for the BUDE Alanine Scan web application.

ccbuilder2

A web application for atomistic modelling of coiled coils and collagens.

de-stress

DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.

elm-molecules

An Elm package for working with molecular structure.

galloway-jg-hairpin-self-assembly-2020

Scripts and data for running particle analysis on AFM data

isambard

Intelligent System for Analysis, Model Building And Rational Design of biomolecules.

org_classification_destress

oshea-j-interface-engineering-2021

oshea-j-wood-c-pbp-design-2023

pdb-compare

pdbench

PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.

pollen

proteinmpnn_custom_training

Scripts for training ProteinMPNN with a custom dataset and other utils

pv

WebGL protein viewer

stam-m-large-scale-analysis-2024

stam-m-wood-c-de-stress-2021

timed-design

Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis

ttscp_l102c_dsb-mbnthz-vs-ttscp_l102c_ddsb-mbnthz

wells-wood-research.github.io

Group website.