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awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

bio_scripts

Practical, reusable scripts for bioinformatics

bioinformatics-training

Bioinformatics training resources

cdna_primer

Scripts for processing PacBio transcriptome (Iso-Seq) data

clusterprofiler

:bar_chart:statistical analysis and visulization of functional profiles for genes and gene clusters

datahub

An experimental hosted platform (GitHub-like) for organizing, managing, sharing, collaborating, and making sense of data.

ensembl

The Ensembl Core Perl API and SQL schema

ensembl-analysis

Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines

ensembl-annotation

The Ensembl gene annotation pipeline (a work in progress)

ensembl-io

File parsing and writing code for Ensembl

ensembl-pipeline

Job management for the Ensembl Genebuild pipeline

ensembl-webcode

The code to run an Ensembl website

falcon

FALCON: experimental PacBio diploid assembler

falcon-integrate

Build and integration- testing for FALCON

genomicsdb

GenomicsDB

gtaxon

gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API server for both local and remote server.

gym

A toolkit for developing and comparing reinforcement learning algorithms.

hbar-dtk

Hierarchical based assembler development toolkit

hello-world

1Discripton

how-to-make-a-computer-operating-system

How to Make a Computer Operating System in C++

interproscan

liveusb-creator

A cross-platform tool for easily installing Fedora on to USB flash drives and SD cards.

second

smrt-analysis

SMRT® Analysis is PacBio's bioinformatics software suite for analyzing single molecule, real-time DNA sequencing data

sparc

tiledb

TileDB

treefam-webcode

Web-code for the TreeFam website

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

vega

A visualization grammar.

workflow-profiler