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3d-printed-mirror-array

3D-printable hexagonal mirror array capable of reflecting sunlight into arbitrary patterns

allcools

Tool kit for ALLC format and methylation analysis

arxiv-sanity-preserver

Web interface for browsing, search and filtering recent arxiv submissions

biolearn

Machine learning tools for biomarker analysis

circlize

Circular visualization in R

complexheatmap

Make Complex Heatmaps

dataremix

A universal data transformation for optimal inference from gene expression datasets

deep-cooc

Deep Co-occurrence Feature Learning for Visual Object Recognition (CVPR 2017)

delayedplier

epiann

Modeling Enhancer-Promoter Interactions with Attention-Based Neural Networks

gwas-pipeline

This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.

marge

API for HOMER in R for Genomic Analysis using Tidy Conventions

methreg

An R package to assess the regulatory potential of DNA methylation regions or sites on gene transcription

nifa

Non-negative Independent Factor Analysis for single cell RNA-seq

openbilibili

plier

Pathway-Level Information Extractor (PLIER): a generative model for gene expression data

pyplier

rcy3

New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community

rerconverge

Analysis of convergence between organismal traits and DNA/protein sequences

rtsne

R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding

sceasy

A package to help convert different single-cell data formats to each other

singlecellsignalr

R package for Bioconductor submission

wgmao.github.io

Personal website