whiffen-cann Goto Github PK

alphafold

Open source code for AlphaFold.

arriba

Fast and accurate gene fusion detection from RNA-Seq data

charger

Characterization of Germline variants

clusterprofiler

:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters

clusterprofiler-book

a complete reference book for clusterProfiler and its sub-packages

ctat-mutations

Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19

deep-image-analogy

A linux version support for multiple images as input, based on https://github.com/msracver/Deep-Image-Analogy/tree/linux

deeplc

DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

denovo-proteogenomics-pipeline

Denovo Proteogeomics pipeline to identify clinically relevent novel variants from RNAseq and Proteomics data.

denovogui

Graphical user interface for de novo sequencing of tandem mass spectra

glyco_msslash

immunopeptidogenomics

Tools for harnessing RNA-seq data to discover cryptic peptides in the immunopeptidome by mass spectrometry

ms2rescore

Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

msslash

Spectral library searching tool based on locality sensitive hashing

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnaseq-workflow

A repository for setting up a RNAseq workflow

rosettafold

This package contains deep learning models and related scripts for RoseTTAFold

scrnaseqpipeline

searchgui

Highly adaptable common interface for proteomics search and de novo engines

tensorflow

Computation using data flow graphs for scalable machine learning

thermorawfileparser

Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

warp

WDL Analysis Research Pipelines