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alignment

DNAseq alignment pipelines for use on HPC systems.

atacseq

ATACseq pipeline

basic_vm_setup

Scripts to simplify an reduce the overhead of firing up a vm and attaching a cinder block

bionimbus-lims

A cloud-based infrastructure for managing, analyzing and sharing genomics datasets.

bionimbusclient2012

Bionimbus Client code used in 2012

bubbs

Various Lab Utilities

clustermap_tools

Somewhat specialized python scripts to create unsupervised hierarchical clustering heat maps

crispr_donor_pipe

dccuploadscripts

djangolims

dnaseqse

documents

Various documents for the lab.

dropseq

Dropseq clustering preprocessing pipeline.

er-diagram

fcc_nn

Various scripts for NN prediction of enhancer region motifs

google

Utilities for interacting with Google documents within the White lab.

hgac_backbone

LIMS for HGAC at IGSB, built on Polymer and Django

hgac_preprocessing

Illumina preprocessing daemon

idr

IDR pipeline code

igsb-account

Small app to create IGSB accounts

mouse_filter

Filter mouse reads from a Human PDX derived .bam

mw_lims

mw_viewer

Module for mw_lims - where the "meat" is

newvariantviewer

nmf_unsupervised_clustering

Clone of repo created by Dr. Tonya Brunetti for dev purposes

pdc_scripts

Scripts for interacting with OpenStack

pec_rnaseq_unified

Pipeline logic used for the PsychENCODE RNAseq Unified Analysis

python-alnstats

Alignment stats report generator.

python-barcode

A barcode checking program.

python-glacier

Glacier command line utility.