whitwham Goto Github PK
Name: Andrew Whitwham
Type: User
Company: Wellcome Sanger Institute
Location: Hinxton, Cambridgeshire
Name: Andrew Whitwham
Type: User
Company: Wellcome Sanger Institute
Location: Hinxton, Cambridgeshire
iRODS client programs and API
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Tools for bam file processing
Tools for early stage alignment file processing
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
Maintenance scripts used with the htslib/samtools/bcftools repositories
A fast K-mer counter for high-fidelity shotgun datasets
C library for high-throughput sequencing data formats
Plugins for use with HTSlib
Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.
collection of data structures and algorithms
Test cases for mpileup variant calling
Perl client library for InfluxDB
Tools (written in C using htslib) for manipulating next-generation sequencing data
Stream files to and from iRODS
Tools for handling Unique Molecular Identifiers in NGS data sets
The http://www.htslib.org/ web site
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