Comments (2)
Yes - they're just warnings, for now. I've had my eye on them for a wee while, and will get to fixing the code producing them shortly.
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Fixed the FutureWarning
with a change from DataFrame.drop_duplicates(cols=…)
to ``DataFrame.drop_duplicates(subset=…)`
Fixed the SettingWithCopyWarning
by change from DataFrame.drop_duplicates()
on a dataframe that contains a column repeating the index, to a DataFrame.groupby().first()
operation that achieves the same result.
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Related Issues (20)
- Rationalise documentation HOT 2
- ERROR: This has possibly been a NUCmer run failure, please investigate > ERROR: NoneType: None HOT 4
- How do I provide a labels.txt or classes.txt file? HOT 3
- Update v2 distribution on PyPI (and bioconda) HOT 8
- Bug in CircleCI tests for python 3.6: caching issue HOT 4
- Updating `Contributors.md` HOT 3
- `test_cli_parsing()` tests fail when `pytest` is run with no flags HOT 1
- Problem with EASY-INSTALL-ENTRY-SCRIPT for miniconda HOT 1
- Untested code in `fastani.py` HOT 1
- pyani: command not found HOT 1
- Use of `unittest.TestCase` assertion methods provides more informative error messages than `assert` HOT 1
- pyani command not found HOT 1
- `pyani` command not found HOT 1
- Cannot run anim in pyani 0.3.0-alpha using provided data, on macosx 12.6, nucmer fails. HOT 4
- Error "Cannot update because the update target is missing these hooks" when trying to use autoupdate on my repo HOT 1
- sending some love for this script: " genbank_get_genomes_by_taxon.py" HOT 2
- ERROR: This has possibly been a NUCmer run failure, please investigate ERROR: NoneType: None HOT 3
- Type strain vs X of genomes HOT 1
- ValueError in pyani plot using pyani 0.3.0-alpha
- Pyani not installing through conda HOT 5
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