Comments (5)
geom_motif
looks like a good implementation of this idea. Since you're importing geom_gene_arrow
, would it help if I tidy up 'gggenes' and put it on CRAN? Or you're welcome to just copy the functions straight into ggtree
if you want.
BTW, thanks for making ggtree
! It's a great package.
from gggenes.
Thanks @GuangchuangYu, looks like it was a dplyr
change. Should be working now.
from gggenes.
I also figure it out. I think it would be more safe to use select_
and all using column name (character).
I am think about using it with ggtree
similar to https://stackoverflow.com/questions/45384281/ggjoy-facet-with-ggtree. It is not possible to work with facet_plot
as you are using facet_wrap
.
Maybe you can work out another version without facet_wrap
, so that we can have lawremi/ggbio#83 using gggenes
.
from gggenes.
FYI: a wrapper function geom_motif
that works with ggtree
.
YuLab-SMU/ggtree#148
from gggenes.
thanks @wilkox for putting the gggenes
on CRAN.
I think the geom_motif
should be refined and better incorporated in gggenes
.
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Related Issues (20)
- theme_genes() produces error HOT 3
- Can you modify the length of the following genomic region HOT 3
- Terminator point feature HOT 5
- Deprecate `size` in favour of `linewidth`
- Implement SBOL sequence feature glyphs HOT 3
- Break strand in intra-CDS regions HOT 2
- geom_feature_label text size very small when ncol=1 in facet_wrap HOT 1
- How to prepare for gggenes HOT 3
- Gene Orientation not correct HOT 1
- An incomprehensible error HOT 4
- would be nice for protein people HOT 2
- How about an option to draw an interrupted X-axis? HOT 1
- Genome alignment HOT 1
- error: No "geom_terminator" functions HOT 2
- Can I draw two different arrows simultaneously on a gene HOT 8
- how to rescale and align genes of different size? HOT 1
- Gene length issue HOT 1
- How to deal with larger length for the genes HOT 1
- Calculate the direction of data obtained from gff file HOT 4
- How to use scale_colour_manual to specify color for individual genes HOT 3
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