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Hey there, fellow bio-enthusiast! 🧬🔬

I'm a pathogen sequencing technician and research data analyst working in the Shelby O'Connor lab at the University of Wisconsin, Madison. My role in client services keeps me at the forefront of cutting-edge research, offering a daily dose of excitement and innovation.

With a solid foundation in the world of genomics, nurtured in the Korf Lab at the University of California, Davis and armed with a Bioinformatics degree, I am grepping and piping my way through large genomic datasets.

My current research interests include:

  • Unraveling the secrets of Viral Evolution
  • Proofreading Genome annotation pipelines
  • Exploring Machine Learning
  • High Throughput Computing
  • Metagenomic environmental virus sampling/sequencing

When I get tired of scratching my head while debugging I like to take a break by dawning my lab coat and transform plasma into FASTQ files.

William Gardner's Projects

embl-my-gbk icon embl-my-gbk

Convert a Genbank file with many extraneous Geneious annotations to EMBL format (even with of strict requirements as IPD)

evta icon evta

Evolutionary Variant Timepoint Analysis

flirty icon flirty

FLIRTSEEK: Finding Loose Interactions and Rogue Target SEEKer. Bioinformatic tool to locate which primers are cross reacting in multiplex reactions.

gene-mapping icon gene-mapping

Taking a single strand of DNA from the 5' to 3' direction in the form of a .txt file, the program will return all proteins found in the DNA. It will account for all possible reading frames and finally hash all the protein sequences to ensure user privacy.

genes_of_mice_n_men icon genes_of_mice_n_men

Which genes are conserved between Homo sapiens and Mus musculus and can be used to study human disease? Specifically, which genes can we study in a mouse model to research human cerebellum function and disease?

haplosc2 icon haplosc2

Nextflow pipeline for calling SARS-CoV-2 haplotypes for any amplicon in any primer scheme

korflab_exam icon korflab_exam

Try and try until you succeed. You only fail if you stop trying.

long-infection-finder-collab icon long-infection-finder-collab

A place to store all programs and changes made to long-infection-finder that are still being developed. Somewhere between a fork and a branch.

macic icon macic

Multiple Allelic Comparison to Identify Candidate genes

msaoutid icon msaoutid

This is a program that uses multiple sequence alignment data from hundreds of genomes to identify misidentified gene start sites.

novar-mmav icon novar-mmav

NOVAseq Reads-Metagenomic Mapping Against Viruses

pizza icon pizza

...because Github needs more pizza recipes and maybe some silly data science

sars-cov-2-haplotype-phasing icon sars-cov-2-haplotype-phasing

A pipeline that can be used to haplotype phase SARS-CoV-2 amplicons from large wastewater and air samples. It will automate a Geneious workflow to reduce human error and ensure reproducibility of analyses.

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