williamrowell Goto Github PK

followers: 116.0 following: 252.0 repos: 29.0 gists: 8.0

Name: Billy Rowell

Type: User

Company: @PacificBiosciences

Bio: Bioinformatics scientist & 1x programmer on a good day. Comp Bio @PacificBiosciences.

Location: Fremont, CA, US

Blog: https://williamrowell.dev

Hi there 👋

I'm Billy, a Bioinformatics Scientist at @PacificBiosciences. I primarily focus on improving our long-read variant calling applications and workflows. Before PacBio, I worked in neurogenetics, classical model organism genetics, enhancer-promoter interactions, and innate immunity. Sometimes, secretly, I miss the wet lab.

Find me on twitter 🐦 until it implodes @nothingclever, or on mastodon 🐘 @[email protected]. Sometimes I answer questions on ⭐ Biostar. I've been lucky enough to collaborate on some pretty cool projects, and you can find the publications on ORCID or Google Scholar.

Billy Rowell's Projects

acquire_frames

Simple MATLAB script for recording short bursts of video at repeated intervals.

awesome-uses

A list of /uses pages detailing developer setups, gear, software and configs.

bfx-cheatsheets

Cheatsheets for my commonly used bioinformatics tasks

bfx_helpers

A junk drawer of one-off scripts that don't deserve their own repo yet.

bioinformatics-workbook

Bioinformatics Workbook repository

drosophila_activity_analysis

Tools for (relatively) quickly analyzing screen data collected with Trikinetics DAM system

fire

A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.

gh-cms

Headless CMS using Github Issues and Github Actions

hifi-deepvariant-snakemake

hugo-devresume-theme

A free resume/CV template made for software developers.

kinefly_tools

long-reads-sequencing-of-snca-in-diseases

Scripts accompanying Tseng E, Rowell WJ, Glenn O-C, Hon T, Barrera J, Kujawa S and Chiba-Falek O (2019) The Landscape of SNCA Transcripts Across Synucleinopathies: New Insights From Long Reads Sequencing Analysis. Front. Genet. 10:584. doi: 10.3389/fgene.2019.00584

markdown-cv

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

markdup

Reference-based PCR duplicate detection from PacBio sequences.

minip

MATLAB script to calculate minimum intensity projection for time intervals.

miniwdl-grid

noteplan-plugins

The main NotePlan repository, which contains the source code for all NotePlan plugins. If a release entry has been created, it will be available for installation from within NotePlan application.