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ashlar

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

eccv2022-rife

ECCV2022 - Real-Time Intermediate Flow Estimation for Video Frame Interpolation

frame-interpolation

FILM: Frame Interpolation for Large Motion, In ECCV 2022.

hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

hx_motility_hierarchicalclustering

This is the final version of motility clustering package

hx_msd_diffusivity

This script was written by HX to compute MSD and Diffusivity from Manually tracked motility data (ImageJ, MetaMorph)

imbalanced-regression

[ICML 2021, Long Talk] Delving into Deep Imbalanced Regression

ingest-validation-tools

HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

mask_rcnn

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

microns-nda-access

Provides instructions and Docker configurations for accessing the microns_phase3_nda schema and/or an isolated database container.

minimagen

MinImagen: A minimal implementation of the Imagen text-to-image model

minimagen-1

MinImagen: A minimal implementation of the Imagen text-to-image model

mjh_particle_aggregation_tracking

This script was initially written by MJH to track the aggregation of NK cells.

outpainting_srn

Wide-Context Semantic Image Extrapolation, CVPR2019

python_tutorial

teaching python to anyone in Wirtz Lab

pytorch-cyclegan-and-pix2pix

Image-to-Image Translation in PyTorch

segment-anything

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

vampire

vampire_open

open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition

wsi_analysis