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biodiscml

Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data

cerebroviz

chronos

Modeling of time series data for CRISPR KO experiments

cicero

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

clustree

Visualise Clusterings at Different Resolutions

cnsummaryplots

Script to compute copy number summary plots from Illumina 450k/EPIC methaltion arrays

crispranalyzer

CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens

epigeneticclock

Calculate DNA methylation age using Horvath 2013 method

fastq-info

Calculate fastq reads and sequencing coverage

gmqn

Gaussian Mixture Quantile Normalization (GMQN)

hic

Analysis of Chromosome Conformation Capture data (Hi-C)

illuminahumanmethylationepicv2anno.ilm20a1.hg38

Annotation object for Illumina EPIC v2 methylation array. Build for internal Glioma Team use and not guaranteed to work.

inform

A new tool for Inference of NetwOrk Response Modules

itd-assembler

ITD detection package from https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1031-8

localgpt

Chat with your documents on your local device using GPT models. No data leaves your device and 100% private.

nf-cmgg-structural

Nextflow workflow for calling structural variants

northernbug.github.io

The NorthernBUG Website

omnipathr

R client for the OmniPath web service

privategpt

Interact privately with your documents using the power of GPT, 100% privately, no data leaks

resume

Resume/CV template using RMarkdown and LaTeX

rira

Code for utility of RIRA for classification of cell types/phenotypes

sarek

Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing

scdblfinder

Methods for detecting doublets in single-cell sequencing data

scp

SCP provides a comprehensive set of tools for single cell data processing and downstream analysis.

scrna-seq_notes

A list of scRNA-seq analysis tools

scrna-seq_online

scrublet

Detect doublets in single-cell RNA-seq data

shiny_gliovis

Data visualization tools for brain tumour datasets

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

slingshot

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.