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Meng Wu's Projects

assemble-solanum-genome icon assemble-solanum-genome

This repository is to record the scripts to assemble and annotate some plant genomes in the genus Solanum. The scripts are aimed to be reproducible that can be used in other plant genome projects. We are still updating the pipeline!

i529-group-projects icon i529-group-projects

A repository for my class group projects in INFO-529 (Bioinformatics Machine Learning)

info526_codes icon info526_codes

Python script for my class project in INFO-526 (Applied Machine Learning)

jaltgenome icon jaltgenome

Raw scripts for de novo assembling a Jaltomata genome. Publication: Wu, M., Kostyun, J. and Moyle, L., 2018. Genome sequence of Jaltomata addresses rapid reproductive trait evolution and enhances comparative genomics in the hyper-diverse Solanaceae. Genome Biology and Evolution, evy274.

jaltgrn icon jaltgrn

Raw scripts for a following project "Regulatory Network"

jaltphylo icon jaltphylo

Raw scripts for the Jaltomata phylogenomics project. Publication: Wu, M., Kostyun, J. L., Hahn, M. W., & Moyle, L. C. (2018). Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance. Molecular Ecology, 27, 3301-3316.

solsexgenome icon solsexgenome

This is the scripts we used for performing the analyses in our research work on Solanum appediculatum genome and identification of sex determination region

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