Won Cheol Yim's Projects
๐ค Assemble, configure, and deploy autonomous AI Agents in your browser.
Process SMRT sequencing kinetic summary to predict regional methylation on large genome
High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
basic walk-throughs for alignment and variant calling from NGS sequencing data
A package to scaffolding polyploidy or heterozygosis genome using Hi-C data
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
Random code produced to answer questions on biostars/seqanswers/etc.
An analysis and visualization platform for 'omics data
๐ ๐ณ A super customizable Jekyll theme for personal site, team site, blog, project, documentation, etc.
The Data Carpentry website repository
Tools for working with second gen assemblies, fasta sequences, etc
AUGUSTUS v3.2.1 for installation on Mac OS X
:microscope: :leo: Bacterial ribosomal RNA predictor
This bartender version could handle arbitrary length of barcode
Introduction to Bioinformatics
Supplementary files for my book, "Bioinformatics Data Skills"
workshop in Bern, Switzerland in Oct 2016
Bioinformatics code libraries and scripts
Conda recipes for the bioconda channel.
Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformaticians scripts/ folder
Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016
Bioinformatics scripts, primarily in perl, dealing primarily with RNA-Seq data and statistics on .fasta files.
Core BioPerl 1.x code
BLASR: The PacBioยฎ long read aligner
A tool for merging transcriptome assemblies via protein homology