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Daniel Meng's Projects

csn icon csn

Cell-specific Network Constructed by Single-cell RNA Sequencing Data

dpcmne icon dpcmne

Detecting protein complexes from protein-protein interaction networks via multi-level network embedding

kineticlearning icon kineticlearning

Learning Kinetic Models from Time Series Proteomics and Metabolomics Data

mcgfinder icon mcgfinder

A novel network regularized matrix decomposition method to detect mutated cancer genes in tumour samples with inter-patient heterogeneity

network_evaluation_tools icon network_evaluation_tools

Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.

nrlpapers icon nrlpapers

Must-read papers on network representation learning (NRL) / network embedding (NE)

python-graph-clustering icon python-graph-clustering

A collection of Python scripts that implement various graph clustering algorithms, specifically for identifying protein complexes from protein-protein interaction networks.

rs-expnet-crnmf icon rs-expnet-crnmf

Discovering mutated driver genes through a robust and sparse co-regularized matrix factorization framework with prior information from mRNA expression patterns and interaction network

scde icon scde

R package for analyzing single-cell RNA-seq data

temporalspatialhub icon temporalspatialhub

Temporal-spatial analysis of the essentiality of hub proteins in protein-protein interaction networks

upsetr icon upsetr

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

yard icon yard

Yet another ROC curve drawer

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