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scripts and prictice
sequence alignment. global, local, glocal.
Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
注释方面的包(主要是各种ID的转换,KEGG或者GO这样的功能注释,基因信息注释,转录本,外显子起始终止等等)
整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集
A curated list of awesome R packages, frameworks and software.
BASIC: BCR and TCR assembly from single cell RNA-seq
BS-seq analysis pipeline
Application for making ENCODE Blacklists
The next version of bwa-mem (WIP; not recommended for production uses at the moment)
Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
chrPos2rsID is a script to convert a list of genomics positions in a format: chrno_position_allele1_allele2 to SNP rsIDs. Script will append rsIDs as a column to an existing file. chrPos2rsID is useful for quick conversion of to SNP rsIDs for various downstream analysis and lookups.
CN-Learn
Copy number variation (CNV) caller utilizing BAM files
Copy number variant detection from targeted DNA sequencing
CNYX scripts
Fork of the CONTRA v2.0.4 package found at http://sourceforge.net/projects/contra-cnv/.
:books:Cookbook for R 中文翻译
Foreign language reading and translation assistant based on copy and translate.
Create KEGG.db Package
curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
✔️(持续更新)李沐 【动手学深度学习v2 PyTorch版】课程学习笔记,更正了AccumulateMore笔记的部分错误,从更加初级的角度做了部分内容补充
Deep Learning Book Chinese Translation
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Python练习册第0010题(生成字母验证码图片)
elPrep: a high-performance tool for preparing sequence alignment/map files in sequencing pipelines.
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.