CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
Compiled releases for Linux, OS X, and Windows are available from cellprofiler.org/releases.
CellProfiler requires Python 2
$ pip install --editable [email protected]:CellProfiler/CellProfiler.git#egg=cellprofiler
NumPy is the fundamental package for scientific computing with Python:
$ pip install numpy
$ pip install --editable .