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ancom

Code and documentation for ANCOM

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

bleuvenetal2019

Jupyter Notebook used for bar-seq library analysis in Bleuven et al 2019

c-score_analysis

co-occurrence

R scripts for performing co-occurrence analyses

co-occurrence_network_analysis

R and python scripts for correlation-based network analysis

codaseq

Functions for compositional analysis of high throughput sequencing

code_and_data_overallecosystemstability

cohesion

Updates and maintenance of the Cohesion method for quantifying connectivity in microbial communities

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

diamond

Accelerated BLAST compatible local sequence aligner.

docs

easymetagenome

Easy Metagenome Pipeline 2019 (1.0)

egg

a developing tool by Daliang

fastspar

Rapid and scalable correlation estimation for compositional data

freess

免费ss账号 免费shadowsocks账号 (长期更新)

ggcor

Extended tools for correlation analysis and visualization.

global-bacterial-diversity-in-wwtps

icamp1

Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)

jons_bioinfo_code

misc code

microbemiseq

Set of useful functions and scripts for analyzing amplicon Miseq data.

phylocom

Software for the Analysis of Phylogenetic Community Structure and Character Evolution, with Phylomatic

practicallombscargle

Source for my paper, Understanding the Lomb-Scargle Periodogram

qiime2

Official repository for the QIIME 2 framework.

rare-and-abundant-bacteria-

Biogeography and ecological diversity patterns of rare and abundant bacteria in oil-contaminated soils

riceseedmicrobiome

Plotting and analysis for rice seed microbiome

s-plot

A simple plot library

schubert_abxd01_mbio_2015

Reproducible workflow for Schubert et al. 2015 mBio

sedar

Read-only mirror of "sedar" from r-forge SVN.

spieceasi

Sparse InversE Covariance estimation for Ecological Association and Statistical Inference