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Zhichao Xu's Projects

agat icon agat

Another Gff Analysis Toolkit

cafe icon cafe

Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

canu icon canu

A single molecule sequence assembler for genomes large and small.

hic-pro icon hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

lachesis icon lachesis

The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

my-r icon my-r

a small collection for my R scripts

nextdenovo icon nextdenovo

Fast and accurate de novo assembler for third generation sequencing (TGS) reads

ngs-pipeline icon ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

pilon icon pilon

Pilon is an automated genome assembly improvement and variant detection tool

redundans icon redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

smartdenovo icon smartdenovo

Ultra-fast de novo assembler using long noisy reads

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