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Yagoub Adam's Projects

1000genomes_data_indexes icon 1000genomes_data_indexes

The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource

ads1-notebooks icon ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

ads1-slides icon ads1-slides

Slides for Algorithms for DNA Sequencing Coursera class

bioinfotools icon bioinfotools

Documenting usage and experience with bioinformatic tools

biomarkers icon biomarkers

Genetics of blood and urine biomarkers in the UK Biobank

chm13 icon chm13

The complete sequence of a human genome

computational_biology1 icon computational_biology1

A python implementation of the algorithms available in the book, Bioinformatics Algorithms: An Active Learning Approach.

emg-viral-pipeline icon emg-viral-pipeline

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

fastq-dl icon fastq-dl

Download FASTQ files from SRA or ENA repositories.

gatk icon gatk

Official code repository for GATK versions 4 and up

gatk-docs icon gatk-docs

Documentation archive for GATK tools and workflows

genotools icon genotools

A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT

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