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bioinformatics123

canu

A single molecule sequence assembler for genomes large and small.

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

circlize

Circular visualization in R

circos

Mirror of cricos. "Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions. "

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

cnci

Coding-Non-Coding Index (CNCI)

deseq2

Guide for the Differential Expression Analysis of RNAseq data using DESeq2

dna-seq-analysis

my notes on whole exome and whole genome sequencing analysis

drawproteins

Creating package to draw proteins from Uniprot API

easy-contrasts-deseq2

ensembl-pipeline

Job management for the Ensembl Genebuild pipeline

featurecounts

featureCounts cwl wrapper

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

heatmaply

Interactive Heat Maps for R Using plotly

hello-world

learn-bioinformatics

linux-command

Linux命令大全搜索工具，内容包含Linux命令手册、详解、学习、搜集。

lncrna-screen

lncRNA-screen

metagenomescope

Web visualization tool for (metagenome) assembly graphs

multi-metagenome

Scripts and tutorials on how to assemble individual microbial genomes from metagenomes

my-r

a small collection for my R scripts

my_wgcna

ngs-pipe

NGS-pipe: next-generation sequencing pipelines for precision oncology

ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

pheatmap

Pretty heatmaps

q_lncrna_analysis

rna-seq-analysis

RNAseq analysis notes from Tommy Tang

rna-seq-scripts

This is a collection of small scripts built by the Lenz lab to make RNA sequencing tasks more efficient.

rna-sequencing-analysis-in-r

Analysis of RNA-seq data using DESeq2