yangxiaofeill Goto Github PK

2019-ncov_graph_model

a graph model to predict the spreading of 2019-nCoV

2023-xiaofeiche-spotsv

2023 graduate student Xiaofei Che, SpotSV

3d-dna

3D de novo assembly (3D DNA) pipeline

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

bdhehohai.github.io

bdhehohai的个人主页

centroflye

An algorithm for centromere assembly using long error-prone reads

chm13

The complete sequence of a human genome

cnnssv

cue

Deep learning framework for SV calling and genotyping

deeplearning-500-questions

深度学习500问，以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述，以帮助自己及有需要的读者。 全书分为18个章节，50余万字。由于水平有限，书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作，联系[email protected] 版权所有，违权必究 Tan 2018.06

flair

Full-Length Alternative Isoform analysis of RNA

flexidot

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

flye

De novo assembler for single molecule sequencing reads using repeat graphs

gcanno

gepard

Genome Pair Rapid Dotter

github-chinese-top-charts

:cn: GitHub中文排行榜，帮助你发现高分优秀中文项目、更高效地吸收国人的优秀经验成果；榜单每周更新一次，敬请关注！（最近更新于10月9日，上班快乐 :tada:）

gjfish

graph-genomics-review

review article on graph genomics

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hicat

HiCAT new project

hicplotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

hicprointerchromosome

Process the HiCPro results of inter-chromosome matrix, and make it fit to hicPlotter input.

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

hipore-c

We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that integrated multi-fragment ligates preparation with third-generation sequencing technology. With HiPore-C approach, we could explore higher-order chromatin interaction genome-widely.

iag

inspector

A tool for evaluating long-read de novo assembly results

kraken2

The second version of the Kraken taxonomic sequence classification system

lccs

Detect LCCS (Local Clustering of Cytosine Sites) from WGBS/RRBS cytosine position data

lja

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences