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bigqa-cm

brainformatics

This Repository is the collection of developing tools and programs potentially used for analyzing single cell NGS data in BI-Harvard Human Brain Project

caaps

calibrating-probabilities-in-supervised-learning

celltoolbox

This repository is a collection of analytical methods for single cell sequencing data.

cgtools

cpgenomics

Chloroplast Genome analysis codes

dartr

Importing and Analysing DArT type snp and silicodart data

ebv_assembly_pipeline

This pipeline includes set of tools for whole genome assembly and quality controls for Epstein Barr Virus

endseqtools

A pipeline for end sequencing data sets.

endsnaketools

This repository will base the snakemake pipelines for the 3'-end sequencing data analysis

fusariumproject

handsfreeemail

This repository is for developing scripts to send emails automatically.

handsfreetweet

This repository provides a collection of codes for tweeting while working.

harvard-gillardonlab

This is a repository for the collaborative effort between Harvard Informatics and Gillardon Lab.

harvard-nissenlab

A repository of reproducible research

harvard-rosenbrocklab

A repository for reproducible analysis workflow.

hierfit

Hierarchical Random Forest for Information Transfer

mafts

Mutation Analysis For Targeted Sequencing

metacancer

A repository for meta analysis on lung cancers from TCGA data.

msatools

A collection of python scripts to manipulate and analyze multiple sequence alignment files

oneliners

Useful bash one-liners for bioinformatics.

r

Using R with Jupyter / RStudio on Binder

rnapipers

This repo is a collection of RNAseq data analysis pipelines developed by members of BMG Lab

rnaseq_tools

scrnaseq_benchmark

Bench-marking classification tools for scRNA-seq data

sctyper

This repository is for our attempt to develop a single cell type prediction tool using scRNAseq datasets.

single-cell-3prime-paper

singlecellrnaseq_workshop

Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.

tacklebox