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Hi there, this is Yen. šŸ‘‹

  • šŸ”­ Iā€™m currently working on web, software, data pipeline development, and biological data analytics.
  • šŸŒ± Iā€™m currently learning to use React and Express JavaScript libraries for web development, Snakemake workflow management system for data pipeline development, and Tensorflow for deep learning applications.

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Yen On Chan's Projects

allelecatalog icon allelecatalog

The AlleleCatalog pipeline is built for generating Allele Catalog datasets using next-generation sequencing (NGS) based genetic data and metadata.

allelecatalogtool icon allelecatalogtool

The Allele Catalog Tool is an Allele Catalog data visualization tool built using PHP, HTML, CSS, and JavaScript in Laravel Framework.

factorymanager icon factorymanager

This is a Java application which can record and organize data to help factory managers run their factories.

faststructure icon faststructure

A variational framework for inferring population structure from SNP genotype data.

genvarx icon genvarx

The Genomic Variations Explorer (GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.

genvarx_data_processing icon genvarx_data_processing

This repository contains data processing scripts that were written and ran to generate CNV data using cn.MOPS and sequence logo figures using Ceqlogo in MEME suite.

happi_gwas_2 icon happi_gwas_2

The HAPPI_GWAS_2 is a pipeline built for genome-wide association study (GWAS).

phenodist icon phenodist

The PhenoDist pipeline is built for generating phenotype distributions for alleles in variant positions and utilizing statistical methods to test for variant position significance.

phenodisttool icon phenodisttool

The Phenotype Distribution Tool (PhenoDistTool) is a tool to demonstrate statistical significance of phenotype distributions for alleles in variant positions.

ridexpress icon ridexpress

RideXpress is an Automated Car Rental System (ARCS) platform. This project is provided by Revature Coding Bootcamp for students who are interested in a web development career.

snakyvc icon snakyvc

The snakyVC pipeline is designed for efficiently and parallelly executing variant calling on next-generation sequencing (NGS) whole-genome datasets.

soybeanaccessionviewer icon soybeanaccessionviewer

The Soybean Accession Viewer is a tool to provide visualization of soybean accessions related data.

soybeanallelecatalogtool icon soybeanallelecatalogtool

The Soybean Allele Catalog Tool is a Allele Catalog data visualization tool built using PHP, HTML, CSS, and JavaScript.

soybeangenvarx icon soybeangenvarx

The Soybean Genomic Variations Explorer (Soybean GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.

soybeanmadistool icon soybeanmadistool

The Soybean MADis Tool is a mutative allele discovery tool composed of mutative allele position combinative calculations and Allele Catalog visualization built using PHP, HTML, CSS, and JavaScript.

soybeanphenodisttool icon soybeanphenodisttool

The Soybean Phenotype Distribution Tool (Soybean PhenoDistTool) is a tool to demonstrate statistical significance of phenotype distributions for alleles in variant positions.

sqlmireba icon sqlmireba

The SQLmireba pipeline is built for database migration supports including data backup, restoration, and more.

visualvariants icon visualvariants

The goal of this project is to create a R package and executable scripts to visualize variants in Variant Call Format (VCF) files and Bcftools processed tab-delimited files.

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