Giter Site home page Giter Site logo

🖥️ Open-Source Projects

A Platform for Drug Repurposing & Biomarker Screening

Such as Knowledge Graph, Omics Data Analyzer, QC Tools, Data Repo for BioMedical Models, DL Models etc.

Title Language Description
BioMedGPS Rust, TypeScript, Python A knowledge graph system with graph neural network for drug repurposing, disease mechanism and biomarker screening.
Chat Publications Python Ask questions and get answers from publications.

Online Quality Assessment Platform for Multi-omics Data

Title Description
Quartet Data Portal The Quartet Project provides publicly accessible multi-omics reference materials and practical tools to enhance the reproducibility and reliability of multi-omics results. Well-characterized multiomics reference materials and quality control metrics pertinent to precision medicine study purposes can be used to measure and mitigate technical variation, enabling more accurate cross-batch and cross-omics data integration in increasingly large-scale and longitudinal studies such as the International Human Phenome Project. GitHub Repo

Multi-omics Data Management and Analysis Platform

Title Language Description
Choppy Pipe Python Choppy is a command-line & web tool for executing WDL workflows on Cromwell servers. (Based on widdler, but more.)
BioMiner Clojure, Vue Online analysis platform for multi-omics data.
BioMiner Indexd Rust Index engine for biomedical data files. We epect it will be a indexing engine for indexing high quality data, such as clinical data (EHR), multi-omics data, whole slide image, etc.
PreQC Pack Rust A quality assessment tool for high throughput sequence data.

Knowledge Curation and Databases

Title Description
Prophet Studio A data labeling and annotation tool for biomedical publications.
GuideScoper Find the Best sgRNAs and Design top-scoring guide RNAs for gene knockout
GlioMarker An integrated Database for Knowledge Exploration of Diagnostic Biomarkers in Gliomas

Collections

Title Description
Antibody DL A Collection of Platform, Tools, and Resources for Antibody Engineering
BioMedical Knowledgebases A collection of biomedical knowledgebases, ontologies, and datasets.

Jingcheng Yang's Projects

antibody-dl icon antibody-dl

A Collection of Platform, Tools, and Resources for Antibody Engineering

belle icon belle

BELLE: Bloom-Enhanced Large Language model Engine(开源中文对话大模型-70亿参数)

biominer-aget icon biominer-aget

BioMiner Aget - Fast Asynchronous Downloader for Omics Data Files

biopoem icon biopoem

Biopoem for DAG Task with Large-scale Servers.

bluebanquise icon bluebanquise

A coherent Ansible roles collection to simply deploy clusters of nodes.

choppy-pipe icon choppy-pipe

An integrated analysis platform for efficiently achieving computational reproducibility

cluster-utils icon cluster-utils

The Choppy Cluster Utilities are the basic file, shell and text manipulation utilities of the GNU operating system and HPC Cluster. These are the cluster utilities which are expected to exist on every operating system or HPC Cluster.

coql icon coql

A Clojure library designed to turn query json into SQL.

csv-utils icon csv-utils

CSV Utility for Data Science, such as cbind, rbind, correlation...

csv2sql icon csv2sql

A simple ETL tool to load CSVs in a directory tree into a SQL database (MySQL/PostgreSQL/SQLite).

factotum icon factotum

A system to programmatically run data pipelines

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.