Comments (1)
we use bioconductor package, https://bioconductor.org/packages/reactome.db/
for reactome data mapping. It seems that the package doesn't contain
metabolites data.
On Sat, Jul 2, 2016 at 12:02 AM, topiwan [email protected] wrote:
Dear Guangchuang,
thanks for giving this nice package to the world ;-)However, to be only able to map genes/proteins deprecates the full power
of Reactome.
Could you think of a possibility to map metabolites as well?Best, Tobias
—
You are receiving this because you are subscribed to this thread.
Reply to this email directly, view it on GitHub
#5, or mute the thread
https://github.com/notifications/unsubscribe/AAmPa1PhkErHCD-XSxbFXhPBigGbBsCBks5qRTozgaJpZM4JDRkJ
.
--------------------------------------------~
Guangchuang Yu, PhD Candidate
State Key Laboratory of Emerging Infectious Diseases
School of Public Health
The University of Hong Kong
Hong Kong SAR, China
www: https://guangchuangyu.github.io
-----------------------------------------~---
from reactomepa.
Related Issues (20)
- gene symbols not being seen with viewPathway calls using openCPU+apache+R3.5+ubuntu18.04 HOT 3
- No gene can be mapped, return NULL HOT 2
- gnutls_handshake() failed: Handshake failed HOT 3
- Cannot change cnetplot edge thickness and color HOT 2
- install issue HOT 1
- Cannot extract results from enrichPathway HOT 4
- Working with more than one gene list HOT 1
- one gene kills the pathway HOT 2
- "No gene can be mapped" when running enrichPathway HOT 4
- enrichPathway
- NO plot output + enrichPathway error HOT 1
- support for plants? HOT 1
- organism avaialble?
- WES data
- No gene can be mapped with gsePathway HOT 2
- Difference between Kobas-i, Reactome website and ReactomePA (may caused by duplicated background genes)
- Specify minimal package versions in the Description file HOT 2
- Support non decreasing sorts in reactome pathway analysis
- ReactomePA plot label text overlap
- P-value correction for multiple testing necessary?
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from reactomepa.