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Yunhao Wang's Projects

alignqc icon alignqc

Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser compatible xhtml to visualize/share/store/extract analysis results.

idp-apa icon idp-apa

Isoform Detection and Prediction, and Alternative PolyAdenylation site analysis

idpase.jl icon idpase.jl

IDP-ASE: haplotyping and quantifying allele-specific expression at the gene and gene isoform level by hybrid sequencing

isoseqapa icon isoseqapa

Full-length transcriptome construction and Alternative cleavage and PolyAdenylation (APA) analysis by PacBio Isoform Sequencing (Iso-Seq) data

isoseqase icon isoseqase

Full-length transcriptome construction and Allele-Specific Expression (ASE) analysis by PacBio Isoform Sequencing (Iso-Seq) data

isoseqats icon isoseqats

Full-length transcriptome construction and Alternative Transcription Start Site (ATSS) analysis by PacBio Isoform Sequencing (Iso-Seq) data

isoseqcon icon isoseqcon

Construct full-length gene isoforms using PacBio Isoform Sequencing (Iso-Seq) data

isoseqfus icon isoseqfus

Construct full-length fusion transcripts by PacBio Isoform Sequencing (Iso-Seq) data

isoseqnat icon isoseqnat

Construct full-length transcriptome and identify Natural sense-Antisense Transcript pairs by PacBio Isoform Sequencing (Iso-Seq) data

isoseqpse icon isoseqpse

Full-length transcriptome construction and transcribed Pseudogene transcript identification by PacBio Isoform Sequencing (Iso-Seq) data

isoseqrep icon isoseqrep

Full-length transcriptome construction and transcribed Repeat element analysis by PacBio Isoform Sequencing (Iso-Seq) data

isoseqsim icon isoseqsim

Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies

meripbox icon meripbox

Analyze RNA modifications by sequencing data: data processing, alignment, peak calling, transcript quantification and motif search

np-smlr icon np-smlr

Single-molecule long-read sequencing reveals the chromatin basis of gene expression

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