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yuroubaba's Projects

atacseq icon atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

awesome icon awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

gca-tools icon gca-tools

Tools to aid with the submission of data to a GCA DCC

jcvi icon jcvi

Python utility libraries on genome assembly, annotation and comparative genomics

pav icon pav

presence - absence variation based on mapping depth.

planttribes icon planttribes

PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics

rnaseq_trinity_tuxedo_workshop icon rnaseq_trinity_tuxedo_workshop

materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.

scanpav icon scanpav

Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.

vcf-kit icon vcf-kit

VCF-kit: Assorted utilities for the variant call format

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