yuzhenpeng Goto Github PK
Name: zhenpeng yu
Type: User
Company: NANJING NORMAL UNIVERSITY
Bio: comparative genomics, evolutionary biology of aging, and adaptive evolution
Location: Jiangsu, China
Name: zhenpeng yu
Type: User
Company: NANJING NORMAL UNIVERSITY
Bio: comparative genomics, evolutionary biology of aging, and adaptive evolution
Location: Jiangsu, China
Scripts for genome alignment, SNP calling, and recombination identification.
Contains scripts used in Edsall et al., 2019
2024 workshop on phylogenomics, organized by Evomics
A pipeline for assembling and annotating vertebrate genomes using Illumina short reads, PacBio or Nanopore long reads and HiC data
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
A bioinformatics research workflow for identifying Human Accelerated Regions (HARs)
This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral"
Another Gtf/Gff Analysis Toolkit
Scripts and data used in manuscript entitled: "Gene co-expression network reveals individualised compensatory responses to ageing in old ant queens"
Algorithm For Gene Order Reconstruction in Ancestors
AKRUP: ancestral karyotype reconstruction universal pipeline
Prunes a given newick tree file to keep only taxa present in a given sequence alignment (FASTA format)
Prepares CDS fasta Alignments for use with several programs
Calculate summary statistics and manipulate multiple sequence alignments
A workflow and toolkit of perl scripts to manipulate multiple sequence alignments
scripts for the project of seven thaliana genomes assembly
Biostatistics - Why? What? How?
Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
核型进化Angiosperm karyotype evolution
annie = ANNotation Information Extractor
Add annotations to a GFF file
Scripts used in the annotation of B10K genomes
基因组结构注释
Scripts to run permutation analysis of methylation levels in apes.
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
Applied Computational Genomics Course at UU: Spring 2020
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.