Comments (12)
Hi @fharman ,
Thanks for posting the issue on GitHub, and again, thanks for using fastmri-reproducible-benchmark
.
Like I said in my e-mail, I think the problem is that you didn't put the h5 files for the validation set in the right place. You need to put them in $FASTMRI_DATA_DIR/singlecoil_val
, which in your case is /home/fatma/fastmri-reproducible-benchmark/fastmri_recon/data/knee_singlecoil_val/singlecoil_val
.
2 minor comments:
- for GitHub issues, in my opinion, it's better to copy-paste the error message and use backquotes '`', rather than using a screenshot. It helps for other people searching this issue, and it helps people help you.
- If you don't have access to a GPU, the training will be very slow. Do you have access to a GPU?
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@fharman no no this problem is not about Cuda 10 (although you do have another problem with your installation of Cuda 10).
This problem is really about the location of the validation files.
Can you give the output of the following command (to be executed in the terminal):
ls -al /home/fatma/fastmri-reproducible-benchmark/fastmri_recon/data/knee_singlecoil_val/singlecoil_val | grep *.h5
?
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If the command didn't list all the h5 files it means that they are not present there.
An explanation might be that there are some typos in the file names, or that when you are using the file explorer you are not looking where you think you are.
Where do you think you placed the validation h5 files and what allow you to check that?
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With what you did you are checking the content of ~/fastmri-reproducible-benchmark/fastmri_recon/data/knee_singlecoil_val
not ~/fastmri-reproducible-benchmark/fastmri_recon/data/knee_singlecoil_val/singlecoil_val
. Please check the content of ~/fastmri-reproducible-benchmark/fastmri_recon/data/knee_singlecoil_val/singlecoil_val
.
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Hi @fharman ,
I am not sure which screenshot you are referring to which shows you have the validation h5 files located in the right place.
You need to move the validation h5 files to the path indicated in the error.
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Hi @fharman ,
Glad to hear you solved the error.
Can you open another issue for this specific problem?
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