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jlerman44 avatar jlerman44 commented on July 29, 2024

Drag nodes themselves (vs. bezier points).. often the curve looks good, but
the node is misplaced?

On Sun, Feb 9, 2014 at 1:04 PM, Zak King [email protected] wrote:

Goal: Build the E. coli core metabolic map in < 10 minutes.

  • Change the direction of a new reaction before adding it. (Arrow
    next to metabolite can be dragged to determine direction)
  • Undo with Ctrl-Z
  • Combine metabolites from different reactions
  • Export as SVG
  • Drag bezier points
  • Add new control points
  • Change the size of the map border
  • Add membranes
  • Show main products of a reaction (as a hint) in reaction input menu

Anything else? @jlerman44 https://github.com/jlerman44?

Reply to this email directly or view it on GitHubhttps://github.com//issues/28
.

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jlerman44 avatar jlerman44 commented on July 29, 2024

This is a great list!

Josh

On Sun, Feb 9, 2014 at 2:30 PM, Joshua Lerman [email protected] wrote:

Drag nodes themselves (vs. bezier points).. often the curve looks good,
but the node is misplaced?

On Sun, Feb 9, 2014 at 1:04 PM, Zak King [email protected] wrote:

Goal: Build the E. coli core metabolic map in < 10 minutes.

  • Change the direction of a new reaction before adding it. (Arrow
    next to metabolite can be dragged to determine direction)
  • Undo with Ctrl-Z
  • Combine metabolites from different reactions
  • Export as SVG
  • Drag bezier points
  • Add new control points
  • Change the size of the map border
  • Add membranes
  • Show main products of a reaction (as a hint) in reaction input menu

Anything else? @jlerman44 https://github.com/jlerman44?

Reply to this email directly or view it on GitHubhttps://github.com//issues/28
.

from escher.

zakandrewking avatar zakandrewking commented on July 29, 2024

Can you grab a screenshot for the node placement problem?

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jlerman44 avatar jlerman44 commented on July 29, 2024

[image: Inline image 1]

On Sun, Feb 9, 2014 at 6:55 PM, Zak King [email protected] wrote:

Can you grab a screenshot for the node placement problem?

Reply to this email directly or view it on GitHubhttps://github.com//issues/28#issuecomment-34597389
.

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jlerman44 avatar jlerman44 commented on July 29, 2024

for example.. moved the right node right, and the arrow did not follow..
could either move the node (I'm thinking easier) or muck with the bezeir
curve?

On Sun, Feb 9, 2014 at 6:55 PM, Zak King [email protected] wrote:

Can you grab a screenshot for the node placement problem?

Reply to this email directly or view it on GitHubhttps://github.com//issues/28#issuecomment-34597389
.

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zakandrewking avatar zakandrewking commented on July 29, 2024

(Image didn't come through.)

But I think the issue is just that the bezier curves are 'dumb', in that the control points get displaced exactly like the nodes. I've been thinking about tricks to improve the bezier displacement, but I haven't implemented anything yet. It's actually a pretty tricky problem.

screen shot 2014-02-10 at 10 11 37 am

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jlerman44 avatar jlerman44 commented on July 29, 2024

escher

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jlerman44 avatar jlerman44 commented on July 29, 2024

We should prioritize the ability to combine nodes.. So if the labels match and you hover 2 common ones together they click together.. Currently, the best we can do is visually overlap common nodes, right?

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jlerman44 avatar jlerman44 commented on July 29, 2024

Its getting way more functional :)

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zakandrewking avatar zakandrewking commented on July 29, 2024

Yup. Combining nodes is important. I added 'snap to grid' to the feature list, also—after seeing your screenshot.

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zakandrewking avatar zakandrewking commented on July 29, 2024

Combine nodes should work now.

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