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2022_pw-mr_pipeline

PW-MR pipeline for cis-MR analyses

afc

Calculates allelic Fold Change (aFC) using standard input files for fastQTL.

allcardiacmri

Genome-wide association on left atrial volume and function

apply_metacca

Exploring metaCCA method on UK Biobank data

aspu

An R package for adaptive sum of powered score test(ASPU) in genetic association studies.

besidemr

BayEsian Set IDEntification Mendelian randomization

bidirectcausal

R package for methods inferring bi-directional causal effects.

bimmer

biobricks-issues

A repo for consolidating issues

brain_pqtl

camera

Mendelian Randomization approach using Cross Ancestral Model

cardiometabolic_prs_plasma_proteome

Source code and software list for the study "Integrative analysis of the plasma proteome and polygenic risk of cardiometabolic diseases" on bioRxiv (doi: 10.1101/2019.12.14.876474)

cellex

CELLEX (CELL-type EXpression-specificity)

coloc

Collection of scripts for colocalization with R analysis

colocquial

Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.

con-cis-mr

R code to implement the methods in 'Conditional inference in cis-MR using weak genetic factors'

conquer

ctgcatalog

A collection of commonly used resources for complex trait genetics.

dvt-mr

The GitHub repository associated with the following paper: https://doi.org/10.1101/476135

dysbiose_project

this repository contains the code (not the data and the results) to reproduce the paper : Impact of the gut microbiota and associated metabolites on cardiometabolic traits, chronic diseases and human longevity: A Mendelian randomization study

easymrbasic_r

enigma

ensdb.hsapiens.v105

Ensembl release 105 annotation databases

epigraphdb-breast-cancer

Breast cancer risk factors exploration with MR-EvE and literature-mined data in EpiGraphDB

epigraphdb_mr_literature_queries

Examples of MR and literature-mined data queries to EpiGraphDB used in publication "Integrating Mendelian randomization and literature-mined evidence for breast cancer risk factors"

eqtl-catalogue-resources

eqtplot

Visualization of Colocalization Between eQTL and GWAS Data

ewas-gwas-comparisons

fatty-acids

fine_mapping

Fine mapping of genes associated with Parkinson's Disease using a variety of methods