Comments (3)
zhangrengang
commented on June 20, 2024
I am sorry for this issue. If you are able to re-build the container, you can install TEsorter via conda, then copy the database into the container, and re-build finally. Alternatively, I will update the image file in a few days.
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zhangrengang
commented on June 20, 2024
@taprs We have updated the container file. You may apptainer pull --arch amd64 library://shang-hongyun/collection/subphaser.sif:1.2.6 and retry.
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taprs
commented on June 20, 2024
The fix solved the issue, thank you very much for the prompt help!
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Related Issues (20)
- Error in os.link(figfile, dstfig) HOT 3
- IndexError: cannot do a non-empty take from an empty axes. HOT 10
- Failed to install SubPhaser HOT 9
- ModuleNotFoundError: No module named 'TEsorter' HOT 4
- The output subgenomes are not paired HOT 4
- Changing mutation rate HOT 1
- Invalid specifier: '>=3.6:' HOT 1
- Only one pair of homologous chromosomes were not phased HOT 5
- matplotlib raise RuntimeError ('Invalid DISPLAY variable') HOT 2
- Unbalanced of chromosomes number and differential kmers number among subgenomes HOT 1
- Singularity container fails if environmental variable `R_LIBS_USER` is set HOT 2
- No differential kmers HOT 2
- ValueError: All singletons are not allowed HOT 1
- ValueError: 0 kmer with fold > 2. Please reset the filter options. HOT 1
- cannot allocate memory HOT 13
- 亚基因组分析 HOT 2
- Getting location of subgenome specific TEs HOT 2
- Suggestion for specific settings to improve subphasing HOT 3
- kmer 13 or less gives a lot of broken pipe errors HOT 5
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