zhengyabiao Goto Github PK

bioperl-live

Core BioPerl 1.x code

dart

DART – a fast and accurate RNA-seq mapper with a divide-and-conquer strategy

distribution-is-all-you-need

The basic distribution probability Tutorial for Deep Learning Researchers

echarts

A powerful, interactive charting and visualization library for browser

folder

genome

Core modules used by the GMS

genvisr

Genome data visualizations

liny00.github.io

Seqhealth Official Website

liquidassociation

migec

A RepSeq processing swiss-knife

ml-iamr

mmar

nextdenovo

Fast and accurate de novo assembler for third generation sequencing (TGS) reads

oncotator

plotly

An interactive graphing library for R

porechop

adapter trimmer for Oxford Nanopore reads

primateai

deep residual neural network for classifying the pathogenicity of missense mutations.

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

pyvcf

A Variant Call Format reader for Python.

repaq

repack Illumina format FASTQ to a smaller binary file (.rfq), which can be further compressed by xz (.rfq.xz)

snakemake-workflows

An experimental repo for common snakemake rules and workflows

soapnuke

A MapReduce Acceleration supported Software for integrated Quality Control and Preprocessing of High-Throughput Sequencing Data

starcode

All pairs search and sequence clustering

tbdb

Standard database for the TBProfiler tool

test

Only for test.

wf-human-sv

Structural variation workflow (and benchmarking) using lra and cuteSV