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behavioral-three-arm-water-system

Arduino and Python code for control of a three arm water system for behavioral training.

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

cell_assemblies

Organization of hippocampal CA3 into correlated cell assemblies supports a stable spatial code

cellreg

Registration of cells across sessions.

cnmf_e

Constrained Nonnegative Matrix Factorization for microEndoscopic data

deepinterpolation

hpc_physical_exercise

island

Revealing neural correlates of behavior without behavioral measurements

multiple_maps

Multiple maps of the same spatial context can stably coexist in the mouse hippocampus

oasis

Deconvolution of calcium imaging data

py-ic-imaging-control

Python wrapper for the IC Imaging Control SDK from The Imaging Source (TIS)

pycmdmessenger

Python interface for CmdMessenger arduino serial communication library

seqnmf

An algorithm for unsupervised discovery of sequential structure

time_vs_experience

unbiased_information_estimation

This repository allows performing a bias-free estimation of information content from limited sample sizes and temporally sparse neuronal activity

visual_drift

Repository containing scripts and processed data for Deitch et al., (2021)