Zachary Winn's Projects
An R package for inferring Haplotypes from high-density, non-targeted genotyping platforms
A data and code repository for the paper of the same name.
Modify KASP assay calls to a VCF format
Data repository for the paper of the same name.
An R script for parsing VCFs into MAS reports for wheat breeders on the east coast of the US
This is a public repository for relevant code from the publication of the same name.
A data repository related to the paper "Genetic Mapping of Resistance To Fusarium Head Blight In Soft Red Winter Wheat Line NC13-20076"
This is a public repository for relevant code from the publication of the same name.
Repository for MDPI Paper in 2021
This is the data repository for the publication of the same name.
A program for pulling flanking sequences from a reference genome for a SNP
A program for fixing TASSEL produced GBS VCFs so that they are coded reference-alternate
This is a public repository for relevant code from the publication of the same name.
The repository contains scripts for wheat genome assembly of PacBio CCS reads.
This pipeline uses repeatmasker, repeatmodeler, and the TREP database (https://trep-db.uzh.ch/) to annotate and mask transposable elements (TEs) in a wheat genome assembly.
This is the public repository for information related to the thesis chapter of the same name as the title.
This is the public repository for information related to the thesis chapter of the same name as the title.
This is a public data repository for data related to a publication.