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BohaoZou's Projects

deepurify icon deepurify

Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.

deepvariant-workflow-with-java icon deepvariant-workflow-with-java

The function of this code is to do deepvariant with multi BAM files . The function of DeepVariant is to do WES flow to detect the SNP or SNV in the file of fastq.The deepvariant packages are developed by Google team .

kraken2 icon kraken2

The second version of the Kraken taxonomic sequence classification system

mlp_build_from_numpy icon mlp_build_from_numpy

This is a mini project of COMP 7015. It build two MLP from Numpy. In my consideration, it is very funny and worth to record.

moss icon moss

An open-source tool-augmented conversational language model from Fudan University

pyllama icon pyllama

LLaMA: Open and Efficient Foundation Language Models

relation-extraction-nlp icon relation-extraction-nlp

It has all procedures in NLP relation extraction. Containing preprocessing, word embedding and model training.

resnext_fpn icon resnext_fpn

Use the frame of ResNeXt-50 and FPN model to do classification.

tacogpt icon tacogpt

TaCoGPT is a large language model employed for the taxonomic classification of microbial sequences.

tuning_playbook icon tuning_playbook

A playbook for systematically maximizing the performance of deep learning models.

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