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activeppi

bconstract_embedding

cnet

CNet: A method to solve a connected network-regularized logistic regression (CNet-RLR) model for feature selection.

cnet-svm

CNet-SVM: A computational method of connected network-constrained support vector machine for detecting biomarkers from gene expression data.

coxreg

CoxReg: A computational method to detect prognostic biomarkers of breast cancer based on gene expression data and regularized Cox proportional hazards models.

dignet

Gene regulatory network based on diffusion model

dlmidta

A DTA prediction model which integrates multi-layered information of drugs and proteins to obtain better prediction performance

efsmarker

EFSmarker: Ensemble feature selection method for diagnostic biomarker discovery.

energyboolean

Landscape

genelink

geobind

Segmentation of nucleic acid binding interface on protein surface with geometric deep learning

greynet

irank

lncpnet

logbtf

LogBTFs: A method of inferring gene regulatory network from single-cell gene expression data using Boolean threshold network model.

logreg

LogReg: A method of regularized logistic regression for biomarker discovery from gene expression data.

mrank

muton

nae

netwalkrank

Cancer driver gene prioritization in multiplex gene regulatory networks by a random walk approach

pki

a bioinformatics method of quantifying the importance of nodes in gene regulatory network via a pseudo knockout index

pst-prna

robmarker

sascca

This repository provides a demo for the multi-omics integration model SASCCA.

scgena

single cell Gene co-Expression Network Analysis

scnae

stabml-rfe

StabML-RFE: A stable machine learning-recursive feature elimination method for robust biomarker discovery.

tensorrank

topmarker