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anndata-rs

awesome-deep-learning

A curated list of awesome Deep Learning tutorials, projects and communities.

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bioconda-recipes

Conda recipes for the bioconda channel.

chip-seq

ChIP-seq Scripts druing my PhD training

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

chromatogram

combat.py

python / numpy / pandas / patsy version of ComBat for removing batch effects.

comp-genomics-class

Code and examples for JHU Computational Genomics class

deep-learning-book

Repository for "Introduction to Artificial Neural Networks and Deep Learning: A Practical Guide with Applications in Python"

deepvac

PyTorch python project standard.

dltk

Deep Learning Toolkit for Medical Image Analysis

docker-cheat-sheet

Docker Cheat Sheet

drugai

Graph Neural Networks for Drug Efficacy Prediction

extract_sequences_from_blast

simple tools for molecular evolution

fastwalk

A multi-thread implementation of node2vec random walk.

fluff

Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing experiments.

forward

Sherlock Port Forwarding Utility

geneviz

Library for visualising genomic features in Python.

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics

gnnhap

Graph neural newtork for haplotype based genetic mapping (Mouse GWAS)

gseapy

Gene Set Enrichment Analysis in Python

haplomap

Haplotype-based computational genetic mapping (HBCGM) for inbred population

ixcpp

Interactive C++ for Data Analysis

leetcode

:pencil: Python / C++ 11 Solutions of All 468 LeetCode Questions

maskrcnn-benchmark

Fast, modular reference implementation of Instance Segmentation and Object Detection algorithms in PyTorch.

mudataseurat

.h5mu files interface for Seurat

neoepitope

Neoantigen discovery pipelines with deep learning ( Immunopeptidome)

pyflow-chipseq

a snakemake pipeline to process ChIP-seq files from GEO or in-house

qpcr

Calculate the Delta_Ct, Delta_Delta_Ct , Fold Changes and Student's t-tests from qRT-PCR experiment