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Name: Johnson Zhang
Type: User
Bio: Computational Biologist
Location: Cloud
Name: Johnson Zhang
Type: User
Bio: Computational Biologist
Location: Cloud
Updated version to handle CEL files
Website for BabuLab
Benchmark software packages for scoring biochmical fractionation co-elution data
Bioinformatics analysis scripts, workflows, general code examples
Best practices, scripts and workflows for performing bulk RNA-seq expression analyses
Custom peak caller for CUT&TAG data
CALN website
A R package for deciphering protein-protein interactions (PPIs) and protein complexes from biomedical fractionation profiles.
Forked from marcottelab/MSblender. Details
[Deprecated]Protein-protein interaction from AP-MS data (ppiAPMS) Please use SMAD(http://bioconductor.org/packages/release/bioc/html/SMAD.html)
RefInt: A curated reference interactome with true positives and negatives for benchmarking protein-protein interactions.
R package for transcriptome analysis
R pipeline for RNA-seq analysis with Salmon
Run EPIC to predict PPI and macro molecular assemblies from co-elution Data
R implementation of the Spatial Analysis of Functional Enrichment (SAFE) algorithm
Useful tools for building Salmon Index
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
A ShinyApp for visualization and explorering Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq) data
Latest update of Bioconductor package SMAD
Statistical Modelling of co-Elution Data to infer protein-protein interactions
Archived package from CRAN
Personal Github Webpage
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