zuricho Goto Github PK

alphafold_local

My guide to install Alphafold locally

alphafold_wiki

AlphaFold Unofficial Wiki

blade-runner-text-game

Python based blade runner text game/unfinished/roguelike/self-designed

ccic

chroma_pipeline

Protein design pipeline for using Chroma, a protein structure generation model, for various tasks

cmapoptimizer

Monte Carlo simulated annealing to optimize the CMAP potentials in molecular mechanics force fields with reweighting calculation

cv

personal webpage for my curriculum vitae

deepaccnet

This is my own test besed on DeepAccNet. It is not the official DeepAccNet.

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

dnaplotlib

DNA plotting library for Python

easy_cell_automata

This is a cell automata program based on python. Currently for learning python basics

foldcraft

Work in progress

free_hand_sketch

Course project for SJTU CS420 Machine Learning course

gitalk.github.io

Gitalk is a modern comment component based on Github Issue and Preact.

igem_crawler_2018sjtu

This project is to craw down some iGEM information from the iGEM website, the result is for statistics.

incarna

incaRNA is a deep learning model to predict RNA secondary structure and model confidence

interesting_bio_visualization

Some interesting methods to visulize genes/genome/proteins

kagome_hvqe

HVQE implementation of Kagome lattice. This project can calculate both ground state energy and exicted energies.

knowledge

Zuricho's personal knowledge base

latex-typora-theme

A LaTeX-style for Typora. This theme makes Typora files look like LaTeX

learning-notebooks

Store my jupyter notebooks to learn lectures and projects

moderncv

A modern curriculum vitae class for LaTeX

my_lab

PTM forcefield development repo.

numpy-ml

Machine learning, in numpy

old_zuricho

Personal website for Bozitao Zhong

opennotes

Some interesting ideass, suggestions are welcomed

parafold_dev

ParaFold - under development

parallelfold

Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

ramachandran_plot

Using biopython & matplotlib to draw different ramachandran plots. The phi psi angle are from AMBER forcefield simulation result & CPPTRAJ analyse

selenium-python

Selenium Python Bindings Documentation