All code and documents associated are visible here:
https://a-bn.github.io/acute_infect_evol/
Published in:
mSphere . 2021 Jan 6;6(1):e01176-20.
Escherichia coli Genomic Diversity within Extraintestinal Acute Infections Argues for Adaptive Evolution at Play
Antoine Bridier-Nahmias, Adrien Launay # 2, Alexandre Bleibtreu, Mélanie Magnan, Violaine Walewski, Jérémie Chatel, Sara Dion 2, Véronique Robbe-Saule, Olivier Clermont, Françoise Norel, Erick Denamur, Olivier Tenaillon
PMID: 33408235 PMCID: PMC7845604 DOI: 10.1128/mSphere.01176-20