Light

abhishekvahadane / coderelease_colornormalization Goto Github PK

View Code? Open in Web Editor NEW

66.0 2.0 37.0 118.72 MB

This is the MATLAB code for stain separation and color normalization in computational pathology (histopathological images)

MATLAB 99.52% M 0.48%

coderelease_colornormalization's Introduction

There are two folders, one for color normalization, and other for accelerated (fast) color normalization (for histological images). Each folder has a readme. Please download and install the SPAMS toolbox
available at http://spams-devel.gforge.inria.fr/index.html.  

Please install the SPAMS toolbox by following below steps or documentation at above URL: 
1. Download SPAMS toolbox. Go to spams-matlab folder.
2. Run start_spams.
3. Add the path of "spams-matlab" to current MATLAB session by executing following command on the MATLAB command prompt
    : "addpath(genpath('PathOfspams-matlab')". Note that you should give correct path of the spams-matlab folder here. 
4. Now the spams-matlab is added. Please go to any other folder and use readme file to run the code.

coderelease_colornormalization's People

Contributors

Stargazers

Watchers

coderelease_colornormalization's Issues

Attempt to execute SCRIPT mexTrainDL as a function:

When I run Demo_colornorm.m, I got the error 'Attempt to execute SCRIPT mexTrainDL as a function:' Thanks

Value of lightness

I think, in Lab color space, L is between [0,100]. So the line below should divide by 100 rather than 255.

CodeRelease_ColorNormalization/SNMF stain separation and color normalization/BLtrans.m

Line 12 in fc05020

Inew=Ivecd([(double(luminlayer(:))/255)<0.9]',:); % threshold=0.9

rRMSE

Hi,
Is the code for computing ground truth W and rRMSE available?
Thanks!

Recommend Projects

React

A declarative, efficient, and flexible JavaScript library for building user interfaces.
Vue.js

🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript

TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
TensorFlow

An Open Source Machine Learning Framework for Everyone
Django

The Web framework for perfectionists with deadlines.
Laravel

A PHP framework for web artisans
D3

Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

javascript

JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
web

Some thing interesting about web. New door for the world.
server

A server is a program made to process requests and deliver data to clients.
Machine learning

Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Visualization

Some thing interesting about visualization, use data art
Game

Some thing interesting about game, make everyone happy.

Recommend Org

Facebook

We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft

Open source projects and samples from Microsoft.
Google

Google ❤️ Open Source for everyone.
Alibaba

Alibaba Open Source for everyone
D3

Data-Driven Documents codes.
Tencent

China tencent open source team.