abyzovlab/age

a tools that implements an algorithm for optimal alignment of sequences with structural variants (SVs)

age's Issues

Error

Hi
I get the following error when submitting directly on the command line on our HPC server.
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Aborted

This error also leads me to believe that the program will hang if it doesnt have enough memory or, it cannot run the program on such large files.

Is this due to the file size being too large? The program will run with large files of the same sequence but crashes if I try to run it on smaller 10Mb (Bytes) chunks of the reference sequence. Looking around has led me to believe that this is a memory issue. Is this correct?

Ideally, I want to look for breakpoints across the entire genome. Is this possible using AGE?

Thank you!