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mixedmodels-misc

miscellaneous materials for mixed models, mostly in R

mlwr

Machine Learning with R

mlxtend

A library of extension and helper modules for Python's data analysis and machine learning libraries.

nanogpt

The simplest, fastest repository for training/finetuning medium-sized GPTs.

ngs-data-analysis-pipeline-docker

packt_nlp_tensorflow_2

This will contain the code for the 2nd edition of NLP with TensorFlow (Edition 2)

perl

phylotoast

Tools for phylogenetic data analysis including visualization and cluster-computing support.

programming-books

my_books

prs-tutorial

A tutorial on how to run basic polygenic risk score analysis

python

python-machine-learning-book

The "Python Machine Learning (1st edition)" book code repository and info resource

python-machine-learning-book-3rd-edition

The "Python Machine Learning (3rd edition)" book code repository

rcodes

rcourse_lesson1

R code for R for Publication: Lesson 1.

rcourse_lesson2

R code for R for Publication: Lesson 2.

rcourse_lesson3

R code for R for Publication: Lesson 3.

rcourse_lesson4

R code for R for Publication: Lesson 4.

rcourse_lesson5

R code for R for Publication: Lesson 5.

rcourse_lesson6

R code for R for Publication: Lesson 6, Parts 1 and 2.

stat-learning

Notes and exercise attempts for "An Introduction to Statistical Learning"

statistics_unh

strucvis

Colorful display of small RNA depth of coverage on a predicted RNA secondary structure

tools

varcmp

The first CHM1 paper (Li, 2014)

variant-calling-pipeline

HPC based pipelines for variant calling using GATK

variationtoolkit

Automatically exported from code.google.com/p/variationtoolkit

washu_codes

website

Coding Train website

workshops_uw_madison

Files associated with microbiome workshops at the Bioinformatics Resource Center (BRC) at the U. of Wisconsin-Madison