adrian-lison/generative-nowcasting

Generative nowcasting models that account for cases with missing reference date and model an underlying renewal process of infections. This allows to conduct missing data imputation, nowcasting and inference of transmission dynamics jointly in one model.

generative-nowcasting's Issues

How to replicate the paper's analysis?

Hi Adrian,

I'd like to do some work on models similar to those implemented in epinowcast. I think building on your work here would be the best place to start as what you have here is a bit more stripped back / research-y than in the epinowcast repo itself.

To get started with this, I thought it'd be good for me to try to replicate the analysis in your paper. Do you know how I'd go about doing this?

In code/ I can see models/ containing the .stan files and utils/. Is there a script somewhere for using the functions in utils/ to run the analysis?

Best wishes,
Adam