adswa/openneuro

A free and open platform for analyzing and sharing neuroimaging data

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Introduction

OpenNeuro

About

OpenNeuro is a free and open platform for analyzing and sharing neuroimaging data. It is based around the Brain Imaging Data Structure specification.

Development setup

This project is managed with Lerna and Yarn. To get started, install Yarn and bootstrap the repo.

yarn install && yarn bootstrap

You can run tests with yarn test at the top level of the project. For each package, yarn test --watch will interactively run the tests for changes since the last commit.

docker-compose is used to run a local copy of all required services together. Copy the example .env.example file to .env and config.env.example to config.env and use docker-compose to start the containers.

docker-compose up -d

For example, you can restart the server container with docker-compose restart server or view logs with docker-compose logs -f --tail=10 server.

Components

• OpenNeuro app - React frontend.
• OpenNeuro server - Node.js web backend.
• DataLad service - DataLad microservice.
• bids-app-host - Docker wrapper for cloud hosted job execution.
• bids-validator - BIDS validation library.

OpenNeuro Command-line utility tool

OpenNeuro supports a CLI tool based on nodejs for uploading and downloading OpenNeuro datasets.